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1999 Transcript profiling in rice (Oryza sativa L.) seedlings using serial analysis of gene expression (SAGE). Matsumura , H., Nirasawa, S., and Terauchi R. The Plant Journal 20:1-8. A method for estimating nucleotide diversity from AFLP data. Innan, H., Terauchi R., Kahl, G., and Tajima, F. Genetics 151:1157-1164. Mapping of the Dioscorea tokoro genome: AFLP markers linked to sex. Terauchi R., and Kahl, G. Genome 42:752-762. 2000 Rapid isolation of promoter sequences with TAIL-PCR: The 5'-flanking regions of Pal and Pgi genes from yams. Terauchi, R., and Kahl, G. Molecular and General Genetics 263:554-560. cDNA cloning and molecular analysis of Papaya small GTP-binding protein gene pgp1. Urasaki, N., Tokumoto, M., Terauchi, R., Tarora, K., Chinen, I., Ban, Y., Kayano, Y. and Tanaka, H. Gene and Genetic Systems 75:293-298. 2001 Production of antimicrobial defensin in Nicotiana benthamiana with a potato virus X vector. Saitoh , H., Kiba, A., Nishihara, M., Yamamura, S., Suzuki, K. and Terauchi, R. Molecular Plant-Microbe Interaction 14:111-115. 2002 Male and hermaphrodite specific RAPD marker for papaya (Carica papaya L.). Urasaki, N., Tokumoto, M., Tarora, K., Ban, Y., Kayano, T., Tanaka, H., Oku, H., Chinen, I. and Terauchi, R. Theoretical and Applied Genetics 104:281-285. Virus-induced silencing of a FtsH gene in Nicotiana benthmiana plants causes a striking bleached leaf phenotype. Saitoh, H. and Terauchi, R. Gene and Genetic Systems. 77:335-340. Overexpressing of wasabi defensin gene confers enhanced resistance to blast fungus (Magnaporthe grisea) in transgenic rice. Kanzaki, H., Nirasawa, S., Saitoh, H., Ito, M., Nishihara, M., Terauchi, R. and Nakamura, I. Theoretical and Applied Genetics.105:809-814. Rapid and highly reliable sex diagnostic PCR assay for papaya (Carica papaya L.). Urasaki, N., Tarora, K., Uehara, T., Chinen, I., Terauchi, R. and Tokumoto, M. Breeding Science 52:333-335. Over-expression of glutathione S-transferase in transgenic rice enhances germination and growth at low temperature . Takesawa, T., Ito M., Kanzaki, Kameya, N., and Nkamura, I. Molecular Breeding 9: 93-101. 2003 Overexpression of Bax-inhibitor suppresses the fungal elicitor-induced cell death in rice (Oryza sativa L.) cells. Matsumura, H., Nirasawa, S., Kiba, A., Urasaki, N., Saitoh, H., Ito, M., Kawai-Yamada, M., Uchimiya, H. and Terauchi, R. The Plant Journal 33:425-434. Virus-induced silencing of WIPK and SIPK genes reduces resistance against a bacterial pathogen but no effect on INF1 induced HR in Nicotiana benthamiana. Sharma, P. C., Ito, A., Shimizu, T., Terauchi, R,.Kamoun S. And Saitoh, H. Molecular Genetics and Genomics 269:583-591. Cytosolic HSP90 and HSP70 are essential components of Inf1-mediated hypersensitive response and non-host resistance to Pseudomonas cichorii in Nitociana benthamiana. Kanzaki, H., Saitoh, H., Ito, A., Fujisawa, S., Kamoun, S., Katou, S., Yoshioka, H. Terauchi , R. Molecular Plant Pathology 4:383-391. Profiling of the genes involved in appressorium formaton of Magnaporhte grisea by Serial Analysis of Gene Expression (SAGE). Irie, T., Matsumura, H., Terauchi, R. and Saitoh H. Molecular Genetics and Genomics 270:181-189. Gene expression analysis of plant host-pathogen interactions by SuperSAGE. Matsumura, H., Reich, S., Ito, A., Saitoh, H., Kamoun, S., Winter, P., Kahl, G., Reuter, M., Krueger, D., and Terauchi R. Proc. Natl. Acad.Sci. USA 100:15718-15723. 2004 Molekulares Wechselspiel von Wirt und Pathogen: Simultane, genomweite Transkriptprofilierung zweier Organismen mit SuperSAGE. Kahl, G., Winter, P., Matsumura, H., Reuter, M., Kruger, D. and Terauchi R. Biospektrum 10: 511-513. A subset of hypersensitive response marker genes,including HSR203J, is the downstream target of a spermine signal transduction pathway in tobacco. Takahashi, Y., Uehara, Y., Berberich, T.,Ito, A.,Saitoh, H., Miyazaki, A., Terauchi, Kusano, T. The Plant Journal. 40:586-595. SuperSAGE. Matsumra, H., Ito, A., Saitoh, H., Winter, P., Kahl, G., Reuter, M., Krueger, D. H. and Terauchi, R. Cellular Microbiology 7:11-18. Serial analysis of gene expression (SAGE) of host plant resistance to the Cassava Mosaic Disease (CMD). Fregene M., Matsumura H.,Terauchi R. Plant Molecular Biology 56:563-571. SuperSAGE: a Potent Transcriptome Tool for Eukaryotic Organisms. Matsumura, H., Reich, S., Reuter, M., Krueger, D. H., Winter, P., Kahl, G. and Terauchi R. In: S.-M. WANG (ed.) SAGE: Current Technologies and Applications. Horizon Scientific Press 77-90. SAGE (Serial Analysis of Gene Expression) in Magnaporthe grisea profiling of cAMP-inducible genes involved in appresssorium formation. Irie, T., Matsumura, H., Terauchi, R. and Satioh, H. In: S. KAWASAKI (ed.) Rice Blast: Interaction with Rice and Control. Kluwer Academic Publishers : 23-28. Transgenic rice expressing wasabi defensin gene exhibit s enhanced resistance to blast fungus (Magnaporthe grisea). Kanzaki, H., Nirasawa, S., Saitoh, H., Ito, M., Nishihara, M., Yamamura, S., Suzuki, K., Terauchi, R. and Nakamura, I. In: S. KAWASAKI (ed.) Rice Blast: Interaction with Rice and Control. Kluwer Academic Publishers : 179-184. 2005 High-throughput in planta expression screening identifies a class II ethylene responsive element binding factor-like protein that regulates plant cell death and nonhost resistance. Nasir, K., Takahashi, Y., Ito, A., Saitoh, H., Matsumura H, Kanzaki H, Shimizu T, Ito M, Fujisawa S, Sharma PC, Ohme-Takagi M, Kamoun S, Terauchi R. The Plant Journal 43:491-505. SuperSAGE combined with PCR walking allows global gene expression profiling of banana (Musa acuminata), a non-model organism. Coemans, B., Matsumura, H., Terauchi, R., Remy, S., Swennen, R., and Sagi, L. Theoretical and Applied Genetics. 111:1118-26. Tobacco ZFT1, a transcriptional repressor with a Cys2/His2 type zinc finger motif that functions in spermine-signaling pathway. Uehara, Y., Takahashi, Y., Berberich T., Miyazaki, A., Takahashi,H., Matsui, K., Ohme-Takagi, M., Saitoh, H., 6, Terauchi, R.,and Kusano, T. Plant Molecular Biology 59:435-448. High-throughput functional screening of plant and pathogen genes in planta. Terauchi R, Nasir KHB, Ito A, Saitoh H, Berberich T, Takahashi Y. Plant Biotechnology 22:455-459. SuperSAGE. Matsumura, H., Reich, S., Reuter, M., Krueger, D., Winter, P., Kahl, G., and Terauchi, R. In: SAGE: Methods in Molecular Biology in press. Genetic control of weediness traits and the maintenance of sympatric crop-weed polymorphism in pearl millet (Pennisetum glaucum). Miura, R., Terauchi, R. Molecular Ecology 14:1251-61. 2006 SuperSAGE array: the direct use of 26-base-pair transcript tags in oligonucleotide arrays. Matsumura H., Nasir KHB, Yoshida K., Ito A., Kahl, G., Krueger, D. H., Terauchi R. Nature Methods 3: 469-474. A Point Mutation of Adh1 Gene is Involved in Repression of Coleoptile Elongation under Submergence in Rice. Saika H., Matsumura H., Takano T., Tsutsumi N. and Nakazono M. Breeding Science 56: 69-74. Regulatory mechanisms of ROI generation are affected by rice spl mutations. Kojo K., Yaeno T.i., Kusumi K., Matsumura H., Fujisawa S., Terauchi R., and Iba K. Plant and Cell Physiology 47:1035-1044. SuperSAGE, a potent tool to dissect plant-microbe interactions. Terauchi, R., Matsumura, H., Ito, A., Fujisawa, S., Bin Nasir, K.H., Saitoh, H., Kamoun, S., Winter, P., Kahl, G., Reuter, M., Krueger, D. In: Biology of Molecular Plant-Microbe Interactions, Vol. 5 Sanchez, F., Ouinto, C., Lopez-Lara I.M., Geiger, O. (eds) in press. Use of Serial Analysis of Gene Expression (SAGE) for transcript profiling in plants. Sharma, P. C., Matsumura, H. and Terauchi, R. In "Genomics Assisted Crop Improvement" (Varshney, R and Toberosa, R. eds) Springer. in press. 2007 Large-scale DNA polymorphism study of Oryza sativa and O. rufipogon reveals the origin and divergence of Asian rice. Rakshit, S., Rakshit, A., Matsumura, H., Takahashi, Y., Hasegawa, Y., Ito, A., Ishii, T., Miyashita, N. T. and Terauchi, R. Theoretical and Applied Genetics. 114:731-743. High-throughput screen of cell death-inducing factors in Nicotiana benthamiana identifies a novel MAPKK that mediates INF1-induced cell death signaling and non-host resistance to Pseudomonas cichorii. Takahashi, Y., Bin Nasir, K. H., Ito, A., Kanzaki, H., Matsumura, H., Saitoh, H., Fujisawa, S., Kamoun, S. and Terauchi, R. Plant Journal. 49:1030-1040. Discovery of single-nucleotide mutations in acetolactate synthase genes by Ecotilling. Wang, G.-X., Tan, M.-K., Rakshit, S., Saitoh, H., Terauchi, R., Imaizumi,T., Ohsako, T., Tominaga, T. Pesticide Biocehmistry and Physiology 88:143-148 Virus-induced gene silencing of 14-3-3 genes abrogates dark repression of nitrate reductase activity in Nicotiana benthamiana. Hirano, T., Ito, A., Berberich, T., Terauchi, R., Saitoh, H. Molecular Genetics and Genomics in press. 2008 High-throughput in planta expression screening identifies an ADP-ribosylation factor (ARF1) involved in non-host resistance and R gene-mediated resistance. Coemans, B., Takahashi, Y., Berberich, T., Ito, A., Kanzaki, H., Matsumura, H., Saitoh, H., Tsuda, S., Kamoun, S., Sagi, L., Swennen, R., Terauchi, R. Mol. Plant Pathology 9:25-36. Functional genomics in a non-model crop: transcriptomics or proteomics? Carpentier, S.C., Coemans, B., Podevin, N., Laukens, K., Witters, E., Matsumura, H., Terauchi, R. Swennen, R. Panis, B. Physiologia Plantarum 133:117-30. Self-EcoTILLING to identify single-nulceotide mutations in mutigene family. Wang, G.-X., Imaizumi, T., Li, W., Saitoh, H., Terauchi, R., Ohsako, T., Tominaga, T. Pesticide Biochemisty and Physiology. 92: 24-29. NbLRK1, a lectin-like recepter kinase protein of Nicotiana benthamiana, interacts with Phytophthora infestans INF1 elicitin and mediates INF1-induced cell death. Kanzaki, K., Saitoh, H., Takahashi, Y., Berberich, T., Ito, A., Kamoun, S.,Terauchi, R. Planta 228:977-987. SuperSAGE revealed different classes of early resistance response genes in Capsicum chinense plants harboring L3-resistance gene infected with Pepper mild mottle virus. Hamada, H., Matsumura, H., Tomita, R., Terauchi, R., Suzuki, K., Kobayashi,K. J. General Plant Pathol. 74:313-321. Spermine signaling plays a significant role in the defense response of Arabidopsis thaliana to cucumber mosaic virus. Mitsuya, Y., Takahashi, Y., Berberich, T., Miyazaki, A., Matsumura, H., Takahashi, H., Terauchi, R., Kusano, T. J. Plant Physiol. 166:626-643. SuperSAGE: A modern platform for genome-wide quantitative transcript profiling. Matsumura H., Detlev H. Krueger, G. Kahl and R. Terauchi Curr. Pharma. Biotech. 9, 368-374. SuperSAGE: The most advanced transcriptome technology for functional genomics. Terauchi, R., Matsumura, H., Krueger, D. H., Kahl, G. In: Handbook of plant functional genomics. (Kahl, G., Meksam, K. eds) Wiley VCH. p 37-54. High-throughput functional screening of genes in planta. Berberich, T., Takahashi, Y,m Saitoh, H., Terauchi, R. In: Handbook of plant functional genomics. (Kahl, G., Meksam, K. eds) Wiley VCH. p113-136. 2009 Serine palmitoyltransferase, the first step enzyme in sphingolipid biosynthesis, is involved in non-host resistance. Takahashi, Y., Berberich, T., Kanzaki, H., Matsumura, H., Saitoh, H., Kusano, T., Terauchi, R. Mol. Plant-Microbe Interact. 22:31-38. Emerging concepts in effector biology of plant-associated organisms. Hogenhout, S. A., van der Hoorn, R. A. L., Terauchi, R., Kamoun, S. Mol.Plant-Microbe Interact. 22:115-122. SuperSAGE: The drought stress-responsive transcriptome of chickpea roots. Medina, C. M. M., Rotter, B., Horres, R., Udupa, S., Besser, B., Bellarmino, L. C., Baum, M., Matsumura, H., Terauchi, R., Kahl, G., Winter, P. BMC Genomics. 9:553 Unraveling the roles of sphingolipids in plant innate immunity. Takahashi, Y., Berbeich, T., Kanzaki, H., Matsumura, H., Saitoh, H., Kusano,T., Terauchi, R. Plant Signaling & Behavior, 4:536-538. Functional characterization and modulation of the DNA cleavage efficiency of Type III restriction enconuclease EcoP15I in its interaction with two sites in the DNA target. Moencke-Buchner, E. , Rothenberg, M., Reich, S., Wagenfuehr, K., Matsumura, H., Terauchi, R., Reuter, M., Krueger, D.H. Journal of Mol. Biol. 387:1309-1319. A multi-faceted genomics approach toward understanding Magnaporthe-rice interactions. Terauchi, R., Win, J., Kamoun, S., Matsumura, H., Saitoh, H., Yoshida, K., Shenton, M., Berberich, T., Fujisawa, S., Ito, A., Takano, Y., Tosa, Y. In: Biology of Molecular Plant-Microbe Interactions. (Lorito M. ed.) Vol 6. Searching for effectors of Magnaporthe oryzae: a multi-faceted genomics approach. Terauchi, R., Win, J., Kamoun, S., Matsumura, H., Saitoh, H., Kanzaki, H., Yoshida, K., Shenton, M., Berberich, T., Fujisawa, S., Ito, A., Takano, Y.,Tosa, Y. In: Rice Blast (Wang, G.-L. and Pang eds.) Springer. pp105-112. Unravelling the interaction of HCMV with dendritic cells using SuperSAGE. Raftery, M.J., Moncke-Buchner, E., Matsumura, H., Giese, T., Winkelmann, B., Reuter, M., Terauchi, R., Schonrich, G., Krueger, D. H. J. Gen. Virol. 90:2221-2233. SPM1 encoding a vacuole-localized protease is required for infection-related autophagy of the rice blast fungus Magnaporthe oryzae. Saitoh, H., Fujisawa, S., Ito, A., Mitsuoka, C., Berberich, T., Tosa, Y., Asakura, M., Takano, Y., Terauchi, R. FEMS Microbiology Letters 300:115-121. Rice blast association genetics reveals three novel avirulence genes, AVR-Pia, AVR-Pii, AVR-Pik/km/kp, whose products are recognized inside rice cells. Yoshida, K., Saitoh, H., Fujisawa, S., Kanzaki, H., Matsumura, H., Yoshida, K., Tosa, Y., Chuma, I., Takano, Y., Win, J., Kamoun, S., Terauchi, R. Plant Cell 21:1573-1591. Use of TILLING for reverse and forward genetics of rice. Rakshit, S., Kanzaki, H., Matsumura, H., Rakshit, A., Fujibe, T., Okuyama, Y., Yoshida, K., Tamiru, M. O., Shenton, M., Utsushi, H., Mitsuoka, C., Abe, A., Kiuchi, Y., Terauchi, R. In: Meksem, K., Kahl, G. (eds) The Handbook of Plant Mutation Screening (Wiley-VCH) in press. Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleous retrograde signaling. Kakizaki, T., Matsumura, H., Nakayama, K., Che, F.-S., Terauchi, R., Inaba, T. Plant Physiol in press.